STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctpACarboxy-terminal processing protease; Start codon not provided; Belongs to the peptidase S41A family. (484 aa)    
Predicted Functional Partners:
BAV0244
Putative exported peptidase.
 
  
 0.941
thiF
Adenylyltransferase.
  
    0.896
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
  
  
 0.854
BAV0534
Conserved hypothetical protein; Start codon not provided.
 
 
 
 0.728
BAV0790
Putative cell wall degrading peptidase.
 
  
 0.691
BAV2527
Partial CDS. Similar to the Bordetellae putative lipoprotein BB1831/BPP2381/BP2001.
  
 
 0.604
BAV0247
GntR-family transcriptional regulator.
       0.588
BAV0248
Putative FAD-linked oxidoreductase.
       0.588
BAV0242
Putative sulphurtransferase; Start codon not provided.
  
    0.566
bvgS
Virulence sensor protein; Start codon not provided.
 
 
 
 0.561
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.