STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
BAV0248Putative FAD-linked oxidoreductase. (470 aa)    
Predicted Functional Partners:
BAV0247
GntR-family transcriptional regulator.
  
    0.782
glcE
Glycolate oxidase subunit.
  
 0.728
thiF
Adenylyltransferase.
       0.589
ctpA
Carboxy-terminal processing protease; Start codon not provided; Belongs to the peptidase S41A family.
       0.588
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
       0.539
BAV0244
Putative exported peptidase.
       0.539
gltB
Glutamate synthase [NADPH] large chain precursor.
     
 0.411
glcF
Glycolate oxidase iron-sulfur subunit.
 
  
 0.409
BAV3262
Electron transfer flavoprotein alpha-subunit.
 
 
 0.404
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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