STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0304Conserved hypothetical protein. (346 aa)    
Predicted Functional Partners:
BAV0306
Conserved hypothetical protein.
 
     0.861
catC2
Methylmuconolactone isomerase; Belongs to the muconolactone Delta-isomerase family.
 
     0.808
catD2
3-oxoadipate enol-lactone hydrolase; Start codon not provided.
 
     0.805
kynU
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
  
  
 0.722
catJ
3-oxoadipate CoA-transferase subunit.
  
    0.578
catI
3-oxoadipate CoA-transferase subunit A.
  
    0.571
BAV2868
Conserved hypothetical protein.
 
     0.535
BAV3264
Putative dehydrogenase; Start codon not provided.
 
     0.475
BAV3258
Putative dehydrogenase; Similarity to kstd2 is limited to the C-terminus.
 
     0.461
BAV0310
Putative acetoacetyl-CoA reductase (short-chain dehydrogenase/reductase).
 
    0.456
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.