STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
catC2Methylmuconolactone isomerase; Belongs to the muconolactone Delta-isomerase family. (91 aa)    
Predicted Functional Partners:
catD2
3-oxoadipate enol-lactone hydrolase; Start codon not provided.
 
 
 0.991
BAV0306
Conserved hypothetical protein.
  
    0.861
BAV0304
Conserved hypothetical protein.
 
     0.808
catJ
3-oxoadipate CoA-transferase subunit.
 
  
 0.777
BAV2367
Probable hydroxylase.
 
  
 0.762
catI
3-oxoadipate CoA-transferase subunit A.
 
  
 0.697
paaE
Probable phenylacetic acid degradation NADH oxidoreductase.
  
  
 0.501
BAV0311
Short-chain fatty acids transporter.
 
     0.492
lpsJ
succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B.
  
  
 0.430
BAV0303
Putative carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
       0.421
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.