STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
catJ3-oxoadipate CoA-transferase subunit. (214 aa)    
Predicted Functional Partners:
catI
3-oxoadipate CoA-transferase subunit A.
 0.999
lpsI
succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A.
 
 0.996
catD2
3-oxoadipate enol-lactone hydrolase; Start codon not provided.
  
 
 0.960
paaJ
Beta-ketoadipyl CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.923
BAV2554
Putative beta-ketothiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.923
catC2
Methylmuconolactone isomerase; Belongs to the muconolactone Delta-isomerase family.
 
  
 0.757
BAV0306
Conserved hypothetical protein.
  
    0.682
BAV0311
Short-chain fatty acids transporter.
 
  
 0.655
BAV0304
Conserved hypothetical protein.
  
    0.573
BAV0310
Putative acetoacetyl-CoA reductase (short-chain dehydrogenase/reductase).
  
 
 0.487
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.