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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0327LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (340 aa)    
Predicted Functional Partners:
BAV0220
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.737
BAV3190
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.729
BAV0989
LysR-family transcriptional regulator; An insertion within codon 40 in this gene results in a mutant strain that does not produce dermonecrotic toxin and has decreased rate of attachment to turkey trachea, in vivo and in vitro; Belongs to the LysR transcriptional regulatory family.
  
     0.721
BAV1537
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.721
BAV3122
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.720
BAV1642
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.708
BAV1031
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.686
BAV1781
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.680
BAV2860
LysR-family transcriptional regulator; Start codon not provided; Belongs to the LysR transcriptional regulatory family.
  
     0.679
BAV0763
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.667
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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