BAV0331 protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAV0331

Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family. (223 aa)

Predicted Functional Partners:

gspF

0.937

gspE

0.813

BAV1541

0.768

gspD

0.754

smf

0.684

gspG

0.673

paaZ

0.618

BAV1360

0.586

BAV2360

0.563

ostA

0.540

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAV0331	BAV1360	BAV0331	BAV1360	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	Putative exported protein.	0.586
BAV0331	BAV1541	BAV0331	BAV1541	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	Putative competence protein.	0.768
BAV0331	BAV2360	BAV0331	BAV2360	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	Type IV pilus assembly protein.	0.563
BAV0331	gspD	BAV0331	BAV0333	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	General secretion pathway protein D.	0.754
BAV0331	gspE	BAV0331	BAV0334	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.813
BAV0331	gspF	BAV0331	BAV0332	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	General secretion pathway protein F.	0.937
BAV0331	gspG	BAV0331	BAV0342	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	General secretion pathway protein G; Start codon not provided.	0.673
BAV0331	ostA	BAV0331	BAV0694	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	Putative organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.	0.540
BAV0331	paaZ	BAV0331	BAV1385	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	Putative phenylacetic acid degradation aldehyde dehydrogenase.	0.618
BAV0331	smf	BAV0331	BAV0198	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	Smf protein.	0.684
BAV1360	BAV0331	BAV1360	BAV0331	Putative exported protein.	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	0.586
BAV1360	BAV1541	BAV1360	BAV1541	Putative exported protein.	Putative competence protein.	0.710
BAV1360	BAV2360	BAV1360	BAV2360	Putative exported protein.	Type IV pilus assembly protein.	0.496
BAV1360	gspE	BAV1360	BAV0334	Putative exported protein.	General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.496
BAV1360	gspF	BAV1360	BAV0332	Putative exported protein.	General secretion pathway protein F.	0.506
BAV1360	smf	BAV1360	BAV0198	Putative exported protein.	Smf protein.	0.448
BAV1541	BAV0331	BAV1541	BAV0331	Putative competence protein.	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	0.768
BAV1541	BAV1360	BAV1541	BAV1360	Putative competence protein.	Putative exported protein.	0.710
BAV1541	BAV2360	BAV1541	BAV2360	Putative competence protein.	Type IV pilus assembly protein.	0.635
BAV1541	gspE	BAV1541	BAV0334	Putative competence protein.	General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.635