STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0331Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family. (223 aa)    
Predicted Functional Partners:
gspF
General secretion pathway protein F.
 
  
 0.925
gspE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.812
BAV1541
Putative competence protein.
 
  
 0.777
gspD
General secretion pathway protein D.
 
   
 0.753
smf
Smf protein.
 
  
 0.662
gspG
General secretion pathway protein G; Start codon not provided.
 
  
 0.662
BAV1360
Putative exported protein.
   
  
 0.585
paaZ
Putative phenylacetic acid degradation aldehyde dehydrogenase.
      
 0.583
wlbJK
Putative membrane protein.
   
 
 0.572
BAV2360
Type IV pilus assembly protein.
 
 
 0.557
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.