STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspFGeneral secretion pathway protein F. (397 aa)    
Predicted Functional Partners:
gspE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.982
BAV2360
Type IV pilus assembly protein.
 
 
 0.964
gspG
General secretion pathway protein G; Start codon not provided.
 
  
 0.946
gspD
General secretion pathway protein D.
 
  
 0.927
BAV0331
Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.
 
  
 0.925
gspI
General secretion pathway protein I.
 
  
 0.881
gspH
General secretion pathway protein H.
 
  
 0.749
BAV1541
Putative competence protein.
  
  
 0.744
gspJ
General secretion pathway protein J.
 
  
 0.742
BAV3046
Type 4 prepilin-like protein leader peptide processing enzyme; Belongs to the peptidase A24 family.
 
  
 0.728
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.