gspF protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gspF

General secretion pathway protein F. (397 aa)

Predicted Functional Partners:

gspE

0.985

BAV2360

0.969

gspG

0.940

BAV0331

0.937

gspD

0.931

gspI

0.871

gspH

0.809

BAV3046

0.775

gspJ

0.774

gspK

0.727

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAV0331	BAV2360	BAV0331	BAV2360	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	Type IV pilus assembly protein.	0.563
BAV0331	gspD	BAV0331	BAV0333	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	General secretion pathway protein D.	0.754
BAV0331	gspE	BAV0331	BAV0334	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.813
BAV0331	gspF	BAV0331	BAV0332	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	General secretion pathway protein F.	0.937
BAV0331	gspG	BAV0331	BAV0342	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	General secretion pathway protein G; Start codon not provided.	0.673
BAV0331	gspH	BAV0331	BAV0341	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	General secretion pathway protein H.	0.403
BAV0331	gspI	BAV0331	BAV0340	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	General secretion pathway protein I.	0.436
BAV2360	BAV0331	BAV2360	BAV0331	Type IV pilus assembly protein.	Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.	0.563
BAV2360	BAV3046	BAV2360	BAV3046	Type IV pilus assembly protein.	Type 4 prepilin-like protein leader peptide processing enzyme; Belongs to the peptidase A24 family.	0.631
BAV2360	gspD	BAV2360	BAV0333	Type IV pilus assembly protein.	General secretion pathway protein D.	0.738
BAV2360	gspE	BAV2360	BAV0334	Type IV pilus assembly protein.	General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.929
BAV2360	gspF	BAV2360	BAV0332	Type IV pilus assembly protein.	General secretion pathway protein F.	0.969
BAV2360	gspG	BAV2360	BAV0342	Type IV pilus assembly protein.	General secretion pathway protein G; Start codon not provided.	0.908
BAV2360	gspH	BAV2360	BAV0341	Type IV pilus assembly protein.	General secretion pathway protein H.	0.680
BAV2360	gspI	BAV2360	BAV0340	Type IV pilus assembly protein.	General secretion pathway protein I.	0.766
BAV2360	gspJ	BAV2360	BAV0339	Type IV pilus assembly protein.	General secretion pathway protein J.	0.508
BAV3046	BAV2360	BAV3046	BAV2360	Type 4 prepilin-like protein leader peptide processing enzyme; Belongs to the peptidase A24 family.	Type IV pilus assembly protein.	0.631
BAV3046	gspD	BAV3046	BAV0333	Type 4 prepilin-like protein leader peptide processing enzyme; Belongs to the peptidase A24 family.	General secretion pathway protein D.	0.440
BAV3046	gspE	BAV3046	BAV0334	Type 4 prepilin-like protein leader peptide processing enzyme; Belongs to the peptidase A24 family.	General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.671
BAV3046	gspF	BAV3046	BAV0332	Type 4 prepilin-like protein leader peptide processing enzyme; Belongs to the peptidase A24 family.	General secretion pathway protein F.	0.775