STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspDGeneral secretion pathway protein D. (860 aa)    
Predicted Functional Partners:
gspE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.956
gspF
General secretion pathway protein F.
 
  
 0.931
gspG
General secretion pathway protein G; Start codon not provided.
  
 0.906
gspI
General secretion pathway protein I.
 
  
 0.884
gspK
General secretion pathway protein K.
 
   
 0.879
gspJ
General secretion pathway protein J.
 
  
 0.842
gspN
General secretion pathway protein N.
 
   
 0.839
gspH
General secretion pathway protein H.
 
  
 0.803
gspC
General secretion pathway protein C.
  
 
 0.758
BAV0331
Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.
 
  
 0.754
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.