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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspEGeneral secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (473 aa)    
Predicted Functional Partners:
gspF
General secretion pathway protein F.
 
 
 0.982
gspD
General secretion pathway protein D.
 
  
 0.954
gspG
General secretion pathway protein G; Start codon not provided.
 
 
 0.941
BAV2360
Type IV pilus assembly protein.
  
  
 
0.929
gspI
General secretion pathway protein I.
 
 
 0.848
BAV0331
Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.
 
 
 0.812
BAV2359
Type IV pilus assembly protein.
  
 
 0.748
gspH
General secretion pathway protein H.
 
 
 0.712
BAV3046
Type 4 prepilin-like protein leader peptide processing enzyme; Belongs to the peptidase A24 family.
 
 
 0.667
BAV1541
Putative competence protein.
  
  
 0.656
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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