STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspLPutative general secretion pathway protein L; Weakly similarity limited to the listed proteins. (324 aa)    
Predicted Functional Partners:
gspI
General secretion pathway protein I.
  
  
 0.823
gspJ
General secretion pathway protein J.
  
  
 0.819
gspK
General secretion pathway protein K.
  
  
 0.818
gspG
General secretion pathway protein G; Start codon not provided.
  
  
 0.818
gspH
General secretion pathway protein H.
  
  
 0.815
gspM
General secretion pathway protein M.
     
 0.808
gspN
General secretion pathway protein N.
       0.794
gspC
General secretion pathway protein C.
     
 0.610
gspE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.448
BAV2360
Type IV pilus assembly protein.
  
 
 0.448
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.