STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gspCGeneral secretion pathway protein C. (105 aa)    
Predicted Functional Partners:
gspN
General secretion pathway protein N.
     
 0.864
gspD
General secretion pathway protein D.
  
 
 0.758
BAV2363
Type IV pilus assembly protein.
  
 
 0.725
gspK
General secretion pathway protein K.
  
  
 0.711
gspJ
General secretion pathway protein J.
  
  
 0.705
gspM
General secretion pathway protein M.
     
 0.693
gspI
General secretion pathway protein I.
  
  
 0.676
gspG
General secretion pathway protein G; Start codon not provided.
  
  
 0.664
gspH
General secretion pathway protein H.
  
  
 0.636
gspL
Putative general secretion pathway protein L; Weakly similarity limited to the listed proteins.
     
 0.610
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.