STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0355MerR-family transcriptional regulator. (329 aa)    
Predicted Functional Partners:
metH
Methionine synthase (5-methyltetrahydrofolate--homocysteine methyltransferase); Start codon not provided.
  
  
 0.654
wlbJK
Putative membrane protein.
   
 
 0.643
bvgS
Virulence sensor protein; Start codon not provided.
  
 
 0.634
blc
Outer membrane lipoprotein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
       0.612
BAV0353
Methyl-accepting-chemotaxis-protein.
   
 
 0.487
phrB
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
  
 0.487
BAV1591
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
  
 0.482
BAV2075
Putative isomerase; Weakly similar to steroid delta-isomerases from Nocardioides simplex and Pseudomonas putida.
 
     0.481
etf
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
  
  
 0.469
BAV2081
Conserved hypothetical protein.
 
   
 0.457
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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