STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rdgC-2Putative phage-related recombination associated protein; May be involved in recombination; Belongs to the RdgC family. (300 aa)    
Predicted Functional Partners:
BAV0394
Hypothetical phage protein; Start codon not provided; No significant database matches.
       0.773
BAV0395
Hypothetical phage protein; No significant database matches.
       0.773
BAV0397
Hypothetical phage protein.
       0.762
BAV0399
Phage-related exonuclease; Also similar to the C-terminal region of Escherichia coli exodeoxyribonuclease VIII, recE; length 866 aa; id=37.4; ungapped id=41.1; E()=1.5e-25; 278 aa overlap; query 14-280 aa; subject 597-860 aa.
     
 0.572
recT
Phage recombination protein.
       0.558
BAV0400
Putative phage membrane protein.
       0.552
BAV0401
Hypothetical phage protein; No significant database matches.
       0.552
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
    0.489
BAV0393
Putative phage-related protein.
       0.455
BAV0402
Phage-related protein.
       0.444
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.