STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0409Hypothetical phage protein. (492 aa)    
Predicted Functional Partners:
recG
ATP-dependent DNA helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
    
  0.900
hsdM
Type i restriction enzyme EcoR124II M protein.
  
    0.700
BAV0368
Conserved hypothetical phage protein; Start codon not provided.
  
    0.699
BAV0385
Restriction-modification system, endonuclease subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.616
hsdR
Type I restriction enzyme EcoR124II R protein; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.616
BAV0386
Restriction modification system, specificity subunit.
  
    0.565
hsdS
Type i restriction enzyme EcoR124II specificity protein.
  
    0.565
BAV0360
Putative type I restriction-modification system specificity determinant (partial).
  
    0.554
BAV1105
Putative outer membrane protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
   
    0.510
BAV1656
Putative adhesin/virulence factor.
   
    0.510
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.