STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcBOrnithine cyclodeaminase. (349 aa)    
Predicted Functional Partners:
putA
Bifunctional PutA protein [includes: proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.942
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 
 0.912
pip
Proline iminopeptidase; Belongs to the peptidase S33 family.
     
  0.900
BAV0895
Putative agmatinase/arginase; Belongs to the arginase family.
    
 0.566
lrp
Leucine-responsive regulatory protein.
     
 0.564
lrp-2
Leucine-responsive regulatory protein.
     
 0.564
lrp-3
Leucine-responsive regulatory protein.
     
 0.564
oxyR
Hydrogen peroxide-inducible genes activator; Belongs to the LysR transcriptional regulatory family.
      
 0.559
BAV2616
AsnC/Lrp-family transcriptional regulator.
 
     0.548
BAV0463
AsnC/Lrp-family transcriptional regulator.
 
     0.518
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.