STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gldAProbable alcohol dehydrogenase; Start codon not provided. (365 aa)    
Predicted Functional Partners:
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
     
 0.936
BAV0490
Probable alcohol dehydrogenase.
 
     0.804
BAV0488
Probable short-chain dehydrogenase/reductase.
       0.773
dad
Putative 2,4'-dihydroxyacetophenone dioxygenase.
       0.750
BAV0485
Putative branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.741
BAV0486
Putative branched-chain amino acid ABC transporter, ATP-binding protein.
       0.741
BAV0484
Putative branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.716
dnaQ
DNA polymerase III, epsilon chain; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
      
 0.591
BAV0483
Putative branched-chain amino acid ABC transporter, periplasmic binding protein.
       0.565
mgsA
Putative methylglyoxal synthase; Similar over its C-terminal region to many methylglyoxal synthases including Escherichia coli,Escherichia coli O157:H7, and Shigella flexneri methylglyoxal synthase mgsA SWALL:MGSA_ECOLI (SWALL:P37066) (152 aa) fasta scores: E(): 0.03, 32.57 38d in 132 aa.
  
   
 0.475
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.