STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmsAPutative methylmalonate-semialdehyde dehydrogenase [acylating]. (497 aa)    
Predicted Functional Partners:
BAV0504
Omega-amino acid--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.970
prpC
2-methylcitrate synthase; Belongs to the citrate synthase family.
  
 0.929
mmsB
3-hydroxyisobutyrate dehydrogenase; Also similar to BAV2903 (35.2 38d); Belongs to the HIBADH-related family.
 
 
 0.927
prpE
propionate--CoA ligase.
   
 0.926
acs
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 0.926
BAV1171
Putative acetyl-CoA synthetase.
   
 0.926
goaG1
4-aminobutyrate aminotransferase; Also similar to BAV2548, (67.952 38d.); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.918
goaG2
4-aminobutyrate aminotransferase; Also similar to BAV2199, (67.952 38d.); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.918
BAV1034
Putative dehydrogenase.
  
 
 0.911
paaJ
Beta-ketoadipyl CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.909
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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