STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BAV0504Omega-amino acid--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (427 aa)    
Predicted Functional Partners:
mmsA
Putative methylmalonate-semialdehyde dehydrogenase [acylating].
 
  
 0.970
amaB
N-carbamoyl-L-amino acid hydrolase.
 
 
  0.933
goaG1
4-aminobutyrate aminotransferase; Also similar to BAV2548, (67.952 38d.); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
0.919
mmsA-2
Methylmalonate-semialdehyde dehydrogenase [acylating].
 
  
 0.918
goaG2
4-aminobutyrate aminotransferase; Also similar to BAV2199, (67.952 38d.); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
0.918
BAV1141
Methylmalonate-semialdehyde dehydrogenase.
 
  
 0.916
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
    
 0.909
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
   
 
 0.909
mmsB
3-hydroxyisobutyrate dehydrogenase; Also similar to BAV2903 (35.2 38d); Belongs to the HIBADH-related family.
     
 0.902
gadA2
Glutamate decarboxylase alpha/beta; Also similar to BAV2621 (80.679 38d); Belongs to the group II decarboxylase family.
    
 0.902
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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