STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BAV0513Putative membrane protein. (451 aa)    
Predicted Functional Partners:
BAV0514
Putative O-antigen biosynthesis glycosyltranferase.
 
    0.911
BAV0516
Putative O-antigen biosynthesis glycosyltransferase.
 
    0.908
wbpP
UDP-N-acetylglucosamine C4 epimerase.
 
    0.904
wbpS
Putative O-antigen biosynthesis aminotransferase.
 
     0.835
wbpU
Putative O-antigen biosynthesis glycosyltransferase.
 
     0.833
wbpT
Putative O-antigen biosynthesis glycosyltransferase.
 
     0.816
murE
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
 
   
 0.781
BAV0540
Putative membrane protein; No significant database matches. Seems to be unique to the Bordetellae.
 
     0.767
BAV0510
Putative O-antigen biosynthesis glycosyltransferase; Start codon not provided.
 
   
 0.758
wbpO
Polysaccharide biosynthesis protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.754
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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