STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0540Putative membrane protein; No significant database matches. Seems to be unique to the Bordetellae. (249 aa)    
Predicted Functional Partners:
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.890
BAV0691
Putative membrane protein.
  
     0.774
BAV2290
Putative pilus assembly protein; No significant database matches.
  
     0.773
BAV0861
Putative ribonuclease inhibitor.
  
     0.772
BAV3116
Putative exported protein.
  
     0.771
BAV0513
Putative membrane protein.
 
     0.767
BAV2871
Conserved hypothetical protein.
  
     0.756
BAV2758
Putative membrane protein.
  
     0.752
BAV1041
Outer membrane porin protein.
  
     0.751
BAV3212
Hypothetical protein; No significant database matches. Seems to be unique to the bordetellae.
  
     0.748
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.