STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hsdRType I restriction enzyme EcoR124II R protein; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1033 aa)    
Predicted Functional Partners:
hsdM
Type i restriction enzyme EcoR124II M protein.
 
  
 0.987
hsdS
Type i restriction enzyme EcoR124II specificity protein.
 
  
 0.976
BAV0387
Restriction-modification system, modification (methylase) subunit; Start codon not provided.
 
  
 0.948
prrC
Anticodon nuclease.
 
     0.947
BAV0386
Restriction modification system, specificity subunit.
 
  
 0.879
BAV0542
Conserved hypothetical protein; Start codon not provided.
  
    0.799
BAV0360
Putative type I restriction-modification system specificity determinant (partial).
  
  
 0.553
BAV1604
Conserved hypothetical protein.
 
     0.469
BAV0547
Putative phage-related protein.
       0.451
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.