STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amnA2-aminophenol 1,6-dioxygenase alpha subunit. (270 aa)    
Predicted Functional Partners:
amnB
2-aminophenol 1,6-dioxygenase beta subunit.
 
  
 
0.973
amnE
2-aminomuconate deaminase.
     0.926
hpaF
5-carboxymethyl-2-hydroxymuconate delta-isomerase.
 
  
 0.822
kynB
Putative cyclase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation.
    
  0.804
kynU
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
     
  0.800
BAV2831
Putative lipase/esterase.
     
  0.800
BAV0388
Hypothetical protein.
  
     0.671
BAV1804
Putative lipoprotein; No significant database matches.
  
     0.657
amnC
2-aminomuconic semialdehyde dehydrogenase; Start codon not provided; Belongs to the aldehyde dehydrogenase family.
  
  
 0.636
BAV2615
Putative poly(aspartic acid) hydrolase.
  
     0.577
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.