STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amnC2-aminomuconic semialdehyde dehydrogenase; Start codon not provided; Belongs to the aldehyde dehydrogenase family. (493 aa)    
Predicted Functional Partners:
amnE
2-aminomuconate deaminase.
 
 
  0.981
amnA
2-aminophenol 1,6-dioxygenase alpha subunit.
  
  
 0.631
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
      0.623
amnB
2-aminophenol 1,6-dioxygenase beta subunit.
  
  
 0.552
wlbJK
Putative membrane protein.
  
 0.545
gltB
Glutamate synthase [NADPH] large chain precursor.
  
  
 0.459
BAV0549
Conserved hypothetical protein (partial); Partial CDS. Seems to be truncated at the N-terminus.
   
   0.437
phbB-2
acetoacetyl-CoA reductase; Start codon not provided; Similar to N-terminal half of Escherichia coli probable 3-hydroxybutyryl-coa dehydrogenase paaH SWALL:PAAH_ECOLI (SWALL:P76083) (475 aa) fasta scores: E(): 5.4e-15, 30.79 38d in 328 aa.
  
 0.419
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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