Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BAV0323 | pyrF | BAV0323 | BAV0575 | Putative 5'(3')-deoxyribonucleotidase. | Putative orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.900 |
BAV0323 | pyrH | BAV0323 | BAV1736 | Putative 5'(3')-deoxyribonucleotidase. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.900 |
BAV0323 | surE | BAV0323 | BAV1981 | Putative 5'(3')-deoxyribonucleotidase. | Acid phosphatase (stationary-phase survival protein); Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.900 |
BAV0323 | upp | BAV0323 | BAV0847 | Putative 5'(3')-deoxyribonucleotidase. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.900 |
BAV2367 | carA | BAV2367 | BAV0919 | Probable hydroxylase. | Carbamoyl-phosphate synthase small chain; Start codon not provided. | 0.949 |
BAV2367 | carB | BAV2367 | BAV0918 | Probable hydroxylase. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.957 |
BAV2367 | pyrD | BAV2367 | BAV2753 | Probable hydroxylase. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.993 |
BAV2367 | pyrE | BAV2367 | BAV3180 | Probable hydroxylase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.972 |
BAV2367 | pyrF | BAV2367 | BAV0575 | Probable hydroxylase. | Putative orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.962 |
carA | BAV2367 | BAV0919 | BAV2367 | Carbamoyl-phosphate synthase small chain; Start codon not provided. | Probable hydroxylase. | 0.949 |
carA | carB | BAV0919 | BAV0918 | Carbamoyl-phosphate synthase small chain; Start codon not provided. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.999 |
carA | pyrD | BAV0919 | BAV2753 | Carbamoyl-phosphate synthase small chain; Start codon not provided. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.963 |
carA | pyrE | BAV0919 | BAV3180 | Carbamoyl-phosphate synthase small chain; Start codon not provided. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.936 |
carA | pyrF | BAV0919 | BAV0575 | Carbamoyl-phosphate synthase small chain; Start codon not provided. | Putative orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.944 |
carA | upp | BAV0919 | BAV0847 | Carbamoyl-phosphate synthase small chain; Start codon not provided. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.524 |
carB | BAV2367 | BAV0918 | BAV2367 | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | Probable hydroxylase. | 0.957 |
carB | carA | BAV0918 | BAV0919 | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | Carbamoyl-phosphate synthase small chain; Start codon not provided. | 0.999 |
carB | pyrD | BAV0918 | BAV2753 | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.969 |
carB | pyrE | BAV0918 | BAV3180 | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.955 |
carB | pyrF | BAV0918 | BAV0575 | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | Putative orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.952 |
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