STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0596Putative monooxygenase/oxidoreductase. (393 aa)    
Predicted Functional Partners:
BAV0595
Pigment production hydroxylase.
 
   
 0.902
bphC
2,3-dihydroxybiphenyl 1,2-dioxygenase.
 
  
 0.769
BAV0597
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
  
 0.586
ribB
Putative 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
  
 0.582
bphD
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase.
 
  
 0.525
bphG
Acetaldehyde dehydrogenase; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds.
 
   
 0.518
wlbJK
Putative membrane protein.
  
  
 0.514
BAV3024
2-amninobenzoyl-CoA monooxygenase/reductase.
  
  
 0.512
paaE
Probable phenylacetic acid degradation NADH oxidoreductase.
  
  
 0.506
bvgS
Virulence sensor protein; Start codon not provided.
  
  
 0.471
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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