STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
bphF4-hydroxy-2-oxovalerate aldolase; Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta- cleavage pathway for the degradation of aromatic compounds. Belongs to the 4-hydroxy-2-oxovalerate aldolase family. (349 aa)    
Predicted Functional Partners:
bphG
Acetaldehyde dehydrogenase; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds.
 
 0.998
bphE
2-keto-4-pentenoate hydratase; Start codon not provided.
 
 
 0.991
BAV0595
Pigment production hydroxylase.
 
 0.827
bphD
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase.
 
 
 0.810
BAV0601
Conserved hypothetical protein; Start codon not provided.
       0.773
bphC
2,3-dihydroxybiphenyl 1,2-dioxygenase.
 
   
 0.772
hpaH-2
2-oxo-hept-3-ene-1,7-dioate hydratase.
 
  
 0.653
hpaH
2-oxo-hept-3-ene-1,7-dioate hydratase.
 
  
 0.632
leuC1
3-isopropylmalate dehydratase large subunit.
  
  
 0.609
leuC2
3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
  
  
 0.609
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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