STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV0603Putative outer membrane porin. (379 aa)    
Predicted Functional Partners:
BAV0357
Outer membrane porin protein; Start codon not provided.
  
  
  0.839
BAV2520
Outer membrane porin protein.
  
  
  0.833
BAV2759
Putative thioredoxin.
  
     0.758
BAV3360
Conserved hypothetical protein.
  
     0.641
phaP
Granule-associated protein (phasin).
  
     0.606
BAV0604
Putative membrane protein.
       0.605
topB
DNA topoisomerase III.
  
     0.592
lptE
Putative lipoprotein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
  
   
 0.536
BAV2516
Conserved hypothetical protein.
  
     0.536
BAV0602
Putative metabolite transporter.
       0.533
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.