STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0603Putative outer membrane porin. (379 aa)    
Predicted Functional Partners:
BAV0357
Outer membrane porin protein; Start codon not provided.
  
  
  0.884
BAV2520
Outer membrane porin protein.
  
  
  0.880
BAV2759
Putative thioredoxin.
  
     0.758
BAV3360
Conserved hypothetical protein.
  
     0.641
BAV3103
Outer membrane porin.
  
  
 
0.631
BAV1041
Outer membrane porin protein.
  
  
 
0.627
phaP
Granule-associated protein (phasin).
  
     0.606
BAV0604
Putative membrane protein.
       0.605
topB
DNA topoisomerase III.
  
     0.592
BAV2516
Conserved hypothetical protein.
  
     0.536
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.