STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0608Short-chain dehydrogenase. (304 aa)    
Predicted Functional Partners:
BAV0610
acyl-CoA dehydrogenase.
  
  0.816
BAV0609
Putative iron-sulphur containing oxygenase.
 
   
 0.800
BAV0622
Probable short-chain dehydrogenase/reductase.
  
     0.765
BAV0611
Putative CoA-transferase; Belongs to the CoA-transferase III family.
   
   0.753
BAV1518
Probable short chain dehydrogenase.
  
 
 
 0.616
BAV0614
Putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase.
  
   0.612
phtD
4,5-dihydroxyphthalate decarboxylase.
       0.591
phnG
1-hydroxy-2-naphthoate dioxygenase; Start codon not provided.
       0.591
BAV0615
Putative oxidoreductase.
       0.557
wlbJK
Putative membrane protein.
    
 
 0.488
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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