STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phtD4,5-dihydroxyphthalate decarboxylase. (328 aa)    
Predicted Functional Partners:
BAV2739
4,5-dihydroxyphthalate decarboxylase.
  
  
 
0.903
phnG
1-hydroxy-2-naphthoate dioxygenase; Start codon not provided.
 
   
 0.900
BAV0615
Putative oxidoreductase.
 
     0.779
BAV0614
Putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase.
       0.753
BAV0609
Putative iron-sulphur containing oxygenase.
 
   
 0.723
BAV0611
Putative CoA-transferase; Belongs to the CoA-transferase III family.
  
    0.620
BAV0656
Putative dioxygenase.
  
   
 0.613
BAV0610
acyl-CoA dehydrogenase.
  
    0.607
BAV0608
Short-chain dehydrogenase.
       0.591
BAV0740
ABC transporter, permease protein.
 
 
 0.557
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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