STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0614Putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase. (284 aa)    
Predicted Functional Partners:
phnG
1-hydroxy-2-naphthoate dioxygenase; Start codon not provided.
 
   
 0.787
phtD
4,5-dihydroxyphthalate decarboxylase.
       0.753
BAV0615
Putative oxidoreductase.
       0.746
BAV0608
Short-chain dehydrogenase.
  
   0.612
BAV0611
Putative CoA-transferase; Belongs to the CoA-transferase III family.
  
    0.601
BAV0610
acyl-CoA dehydrogenase.
  
  
 0.581
BAV0609
Putative iron-sulphur containing oxygenase.
     
 0.578
BAV1526
Putative membrane protein.
  
    0.544
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
  
  
 0.520
citB
Citrate utilization protein B.
   
    0.410
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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