STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BAV0614Putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase. (284 aa)    
Predicted Functional Partners:
phnG
1-hydroxy-2-naphthoate dioxygenase; Start codon not provided.
 
   
 0.787
phtD
4,5-dihydroxyphthalate decarboxylase.
       0.753
BAV0615
Putative oxidoreductase.
       0.746
BAV0611
Putative CoA-transferase; Belongs to the CoA-transferase III family.
  
    0.609
BAV0608
Short-chain dehydrogenase.
   
   0.589
BAV0609
Putative iron-sulphur containing oxygenase.
     
 0.578
BAV0610
acyl-CoA dehydrogenase.
       0.575
BAV1526
Putative membrane protein.
  
    0.548
citB
Citrate utilization protein B.
   
    0.531
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
  
  
 0.481
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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