STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0623Carboxyvinyl-carboxyphosphonate phosphorylmutase. (298 aa)    
Predicted Functional Partners:
BAV0622
Probable short-chain dehydrogenase/reductase.
  
    0.783
BAV0621
Probable short chain dehydrogenase/reductase.
  
    0.782
prpC
2-methylcitrate synthase; Belongs to the citrate synthase family.
 
 
 0.780
BAV0624
GntR-family transcriptional regulator.
  
  
 0.738
BAV0620
Putative exported protein.
       0.610
gltA
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.604
BAV0606
Putative catabolic enzyme.
 
  
 0.568
acnA1
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 
 0.539
BAV3260
Conserved hypothetical protein; Start codon not provided.
 
  
 0.533
BAV0210
Conserved hypothetical protein.
 
  
 0.513
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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