STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0627Putative isochorismatase hydrolase. (242 aa)    
Predicted Functional Partners:
maiA2
Maleate cis-trans isomerase; Catalyzes cis-trans isomerization of the C2-C3 double bond in maleate to yield fumarate.
 
 
 0.938
maiA1
Maleate cis-trans isomerase; Catalyzes cis-trans isomerization of the C2-C3 double bond in maleate to yield fumarate.
 
 
 0.937
BAV1530
Putative alpha/beta hydrolase.
 
 0.929
BAV2743
Probable hydrolase.
 
 0.928
BAV1528
Probable hydrolase.
  
  
 
0.925
BAV2741
Putative isochorismatase-family hydrolase.
  
  
 
0.923
BAV0628
Conserved hypothetical protein.
       0.762
BAV0955
Putative isochorismatase hydrolase; Start codon not provided.
  
     0.740
BAV3256
Putative chorismatase hydrolase.
  
     0.716
BAV0626
Hydantoinase.
 
     0.713
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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