STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
actPCopper-transporting P-type ATPase. (813 aa)    
Predicted Functional Partners:
sodC
Superoxide dismutase [cu-zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
 0.984
BAV1974
Putative heavy metal transport protein.
 
 
 0.852
cadA
Cadmium-transporting ATPase.
 
 
0.795
dsbE
Thiol:disulfide interchange protein.
 
 
 0.767
wlbJK
Putative membrane protein.
  
  
 0.689
BAV2678
ArsR-family transcriptional regulator.
 
  
 0.683
BAV1973
Putative antioxidant.
   
 
 0.633
bvgS
Virulence sensor protein; Start codon not provided.
  
  
 0.622
BAV2387
Putative zinc transporter.
 
   
 0.610
BAV0100
Putative bifunctional protein: two-component system sensor protein and solute-binding protein; Start codon not provided.
 
  
 0.603
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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