STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0634Ferric-siderophore receptor. (820 aa)    
Predicted Functional Partners:
BAV0633
Putative membrane protein.
 
  
 0.936
fecR
Regulator of iron dicitrate transport; Start codon not provided.
 
 
 0.898
BAV2850
Putative iron transport sensor protein.
 
 
 0.830
bfeA
Ferric enterobactin receptor.
  
  
 0.825
hurR
Heme uptake transmembrane sensor.
 
 
 0.821
fecR-2
Transmembrane sensor protein.
 
 
 0.811
BAV2106
Putative transmembrane sensor protein; Start codon not provided.
 
 
 0.785
BAV0632
Putative membrane protein.
       0.781
fecI
Probable RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.760
tonB
Siderophore-mediated iron transport protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.640
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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