STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
cysD1O-acetylhomoserine sulfhydrylase; Almost identical to BAV2830 (98.8 38d). (433 aa)    
Predicted Functional Partners:
metX
Homoserine-ortho-acyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine.
 
 
 0.962
metH
Methionine synthase (5-methyltetrahydrofolate--homocysteine methyltransferase); Start codon not provided.
  
 
 0.950
metC
Cystathionine beta-lyase; Previously sequenced as Bordetella avium cystathionine beta-lyase metC SWALL:METC_BORAV (SWALL:Q07703) (395 aa).
 
 
0.940
BAV2122
Cys/Met metabolism PLP-dependent enzyme.
  
  
 
0.916
metK
S-adenosylmethionine synthetase; Start codon not provided; Belongs to the AdoMet synthase family.
   
 
 0.912
metE
Putative 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase.
  
 
 0.912
metE-2
5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
  
 
 0.912
acyH
Adenosylhomocysteinase; Start codon not provided.
     
 0.908
BAV0109
Conserved hypothetical protein.
    
  0.901
tyrB
Aromatic-amino-acid aminotransferase.
     
  0.900
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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