STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0646Putative acyl-CoA reductase. (487 aa)    
Predicted Functional Partners:
BAV0647
Acyl-protein synthetase.
 
 
 
 0.987
BAV0643
ABC transporter, substrate binding protein.
 
     0.895
BAV0642
Probable short chain dehydrogenase/reductase.
 
   0.855
BAV0644
ABC transporter, permease protein.
       0.788
BAV0645
ABC transporter, ATP-binding protein.
       0.781
rimJ
Ribosomal-protein-alanine acetyltransferase.
       0.507
gltB
Glutamate synthase [NADPH] large chain precursor.
  
  
 0.464
wlbJK
Putative membrane protein.
  
 
 0.457
BAV0641
Putative lipoprotein; No significant database matches.
       0.437
paaK-2
Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
  
 
 0.424
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.