STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0647Acyl-protein synthetase. (368 aa)    
Predicted Functional Partners:
BAV0646
Putative acyl-CoA reductase.
 
 
 
 0.987
BAV0643
ABC transporter, substrate binding protein.
 
    0.858
BAV0642
Probable short chain dehydrogenase/reductase.
 
     0.810
BAV0644
ABC transporter, permease protein.
       0.787
BAV0645
ABC transporter, ATP-binding protein.
       0.775
rimJ
Ribosomal-protein-alanine acetyltransferase.
       0.510
BAV0226
acyl-CoA dehydrogenase.
    
  0.505
BAV0610
acyl-CoA dehydrogenase.
    
  0.505
gcdH
glutaryl-CoA dehydrogenase.
    
  0.505
BAV1367
Probable acyl-CoA dehydrogenase.
    
  0.505
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.