STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimJRibosomal-protein-alanine acetyltransferase. (194 aa)    
Predicted Functional Partners:
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.525
BAV0647
Acyl-protein synthetase.
       0.510
BAV0642
Probable short chain dehydrogenase/reductase.
       0.507
BAV0643
ABC transporter, substrate binding protein.
       0.507
BAV0644
ABC transporter, permease protein.
       0.507
BAV0645
ABC transporter, ATP-binding protein.
       0.507
BAV0646
Putative acyl-CoA reductase.
       0.507
kdgT
2-keto-3-deoxygluconate permease; Start codon not provided.
       0.433
BAV0650
Conserved hypothetical protein; Start codon not provided.
       0.433
pdxA1
4-hydroxythreonine-4-phosphate dehydrogenase; Also similar to BAV2168, (48.318 38d.); Belongs to the PdxA family.
       0.433
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.