STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0654Putative hydrolase. (284 aa)    
Predicted Functional Partners:
BAV0655
Putative cyclodeaminase.
       0.773
citB
Citrate utilization protein B.
   
    0.722
BAV0703
Putative exported protein.
  
    0.709
BAV0656
Putative dioxygenase.
     
 0.607
hpaI
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.583
hpaH
2-oxo-hept-3-ene-1,7-dioate hydratase.
  
  
 0.578
BAV0657
Putative oxygenase (small subunit).
     
 0.577
BAV0660
Putative ferredoxin reductase.
     
 0.554
BAV1526
Putative membrane protein.
  
    0.548
BAV0658
Putative oxygenase (large subunit).
     
 0.547
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.