STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0655Putative cyclodeaminase. (331 aa)    
Predicted Functional Partners:
BAV0654
Putative hydrolase.
       0.773
BAV0660
Putative ferredoxin reductase.
 
     0.612
BAV0656
Putative dioxygenase.
       0.599
BAV0653
GntR-family transcriptional regulator.
 
     0.571
BAV0657
Putative oxygenase (small subunit).
       0.569
BAV0661
Conserved hypothetical protein.
     
 0.553
BAV0658
Putative oxygenase (large subunit).
       0.543
BAV0659
Ferredoxin.
       0.543
hpaI
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
  
    0.524
hpaH
2-oxo-hept-3-ene-1,7-dioate hydratase.
     
 0.487
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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