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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0658Putative oxygenase (large subunit). (429 aa)    
Predicted Functional Partners:
BAV0657
Putative oxygenase (small subunit).
 
 0.998
BAV1584
Putative dioxygenase system, beta subunit.
 
 0.993
BAV0659
Ferredoxin.
 
  
 0.982
BAV2745
Probable decarboxylase.
  
  
  0.919
BAV1583
Putative dioxygenase system, alpha subunit.
  
  
 
0.907
BAV3020
2-aminobenzoate-CoA ligase.
     
 0.901
BAV0656
Putative dioxygenase.
 
     0.808
BAV0660
Putative ferredoxin reductase.
    
 0.792
BAV0661
Conserved hypothetical protein.
       0.778
hpaH
2-oxo-hept-3-ene-1,7-dioate hydratase.
 
   
 0.733
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.