STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0659Ferredoxin. (109 aa)    
Predicted Functional Partners:
BAV0657
Putative oxygenase (small subunit).
 
 
 0.983
BAV0658
Putative oxygenase (large subunit).
 
  
 0.982
BAV1584
Putative dioxygenase system, beta subunit.
 
 
 0.938
BAV1583
Putative dioxygenase system, alpha subunit.
 
  
 0.928
BAV0660
Putative ferredoxin reductase.
 
  
 0.924
BAV2745
Probable decarboxylase.
 
 
  0.919
BAV3020
2-aminobenzoate-CoA ligase.
     
  0.900
BAV0661
Conserved hypothetical protein.
       0.773
cysG
Siroheme synthase includes: uroporphyrin-iii c-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
  
  
 0.772
BAV0656
Putative dioxygenase.
 
     0.736
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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