BAV0677 protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAV0677

Amino acid ABC transporter, solute-binding protein. (284 aa)

Predicted Functional Partners:

BAV0678

0.951

BAV0679

0.949

BAV0680

0.946

BAV1866

0.825

glnP

0.822

BAV1865

0.806

glnQ

0.797

BAV0898

0.776

aapP

0.745

aapM

0.699

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAV0677	BAV0678	BAV0677	BAV0678	Amino acid ABC transporter, solute-binding protein.	Amino acid ABC transporter, atp-binding protein.	0.951
BAV0677	BAV0679	BAV0677	BAV0679	Amino acid ABC transporter, solute-binding protein.	Amino acid ABC transporter, permease protein.	0.949
BAV0677	BAV0680	BAV0677	BAV0680	Amino acid ABC transporter, solute-binding protein.	Amino acid ABC transporter, permease protein.	0.946
BAV0677	BAV0898	BAV0677	BAV0898	Amino acid ABC transporter, solute-binding protein.	Putative amino acid ABC transporter, permease component (pseudogene); Unassigned protein domain.	0.776
BAV0677	BAV1865	BAV0677	BAV1865	Amino acid ABC transporter, solute-binding protein.	ABC-transporter, ATP-binding protein.	0.806
BAV0677	BAV1866	BAV0677	BAV1866	Amino acid ABC transporter, solute-binding protein.	ABC transporter, permease protein.	0.825
BAV0677	aapM	BAV0677	BAV3056	Amino acid ABC transporter, solute-binding protein.	L-amino acid ABC transporter, permease protein.	0.699
BAV0677	aapP	BAV0677	BAV3055	Amino acid ABC transporter, solute-binding protein.	L-amino acid ABC transporter, ATP-binding protein.	0.745
BAV0677	glnP	BAV0677	BAV1959	Amino acid ABC transporter, solute-binding protein.	Glutamine ABC transporter, permease protein; Start codon not provided.	0.822
BAV0677	glnQ	BAV0677	BAV1958	Amino acid ABC transporter, solute-binding protein.	Glutamine ABC transporter, ATP-binding protein.	0.797
BAV0678	BAV0677	BAV0678	BAV0677	Amino acid ABC transporter, atp-binding protein.	Amino acid ABC transporter, solute-binding protein.	0.951
BAV0678	BAV0679	BAV0678	BAV0679	Amino acid ABC transporter, atp-binding protein.	Amino acid ABC transporter, permease protein.	0.972
BAV0678	BAV0680	BAV0678	BAV0680	Amino acid ABC transporter, atp-binding protein.	Amino acid ABC transporter, permease protein.	0.969
BAV0678	BAV1866	BAV0678	BAV1866	Amino acid ABC transporter, atp-binding protein.	ABC transporter, permease protein.	0.921
BAV0678	aapM	BAV0678	BAV3056	Amino acid ABC transporter, atp-binding protein.	L-amino acid ABC transporter, permease protein.	0.857
BAV0678	glnP	BAV0678	BAV1959	Amino acid ABC transporter, atp-binding protein.	Glutamine ABC transporter, permease protein; Start codon not provided.	0.900
BAV0679	BAV0677	BAV0679	BAV0677	Amino acid ABC transporter, permease protein.	Amino acid ABC transporter, solute-binding protein.	0.949
BAV0679	BAV0678	BAV0679	BAV0678	Amino acid ABC transporter, permease protein.	Amino acid ABC transporter, atp-binding protein.	0.972
BAV0679	BAV0680	BAV0679	BAV0680	Amino acid ABC transporter, permease protein.	Amino acid ABC transporter, permease protein.	0.861
BAV0679	BAV0898	BAV0679	BAV0898	Amino acid ABC transporter, permease protein.	Putative amino acid ABC transporter, permease component (pseudogene); Unassigned protein domain.	0.876