STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0683FAD dependent oxidase; Start codon not provided. (478 aa)    
Predicted Functional Partners:
BAV0682
Hydantoin racemase.
       0.773
glcE
Glycolate oxidase subunit.
  
 0.736
BAV0684
Putative short chain dehydrogenase.
   
   0.709
BAV0681
Putative dihydrodipicolinate synthase; Belongs to the DapA family.
  
    0.701
BAV0678
Amino acid ABC transporter, atp-binding protein.
   
   0.503
BAV0680
Amino acid ABC transporter, permease protein.
       0.490
BAV0679
Amino acid ABC transporter, permease protein.
       0.480
BAV0677
Amino acid ABC transporter, solute-binding protein.
       0.448
glcF
Glycolate oxidase iron-sulfur subunit.
 
  
 0.434
gltB
Glutamate synthase [NADPH] large chain precursor.
     
 0.411
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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