STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
garKGlycerate kinase; Start codon not provided. (381 aa)    
Predicted Functional Partners:
glxR
Putative transporter (pseudogene); Unassigned protein domain.
  
 
 0.914
gpmB
Probable phosphoglycerate mutase 2.
     
 0.906
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
     
 0.904
BAV2205
Putative 2-hydroxyacid dehydrogenase; Start codon not provided.
    
  0.901
BAV1994
Putative zinc-binding cytidine/deoxycytidylate deaminase; Start codon not provided.
 
 
    0.695
pykA
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.655
BAV0770
Putative permease.
  
  
 0.526
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.