STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
citBCitrate utilization protein B. (384 aa)    
Predicted Functional Partners:
BAV0703
Putative exported protein.
 
  
 0.995
BAV1526
Putative membrane protein.
  
    0.973
BAV0036
Putative dioxygenase.
   
    0.896
BAV3264
Putative dehydrogenase; Start codon not provided.
 
  
 0.886
BAV3258
Putative dehydrogenase; Similarity to kstd2 is limited to the C-terminus.
 
  
 0.884
BAV0704
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
    0.837
cbbbC
Probable molybdopterin-containing oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.827
fdnG
Formate dehydrogenase, major subunit; The active-site selenocysteine, residue 197, is encoded by an opal stop codon.
  
 
 0.827
fdnI
Formate dehydrogenase, cytochrome b556.
  
 
 0.827
BAV0654
Putative hydrolase.
   
    0.744
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.