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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0703Putative exported protein. (466 aa)    
Predicted Functional Partners:
citB
Citrate utilization protein B.
 
  
 0.995
fumA
Putative fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.915
sdhB
Succinate dehydrogenase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 0.910
sdhC
Succinate dehydrogenase cytochrome b-556 subunit.
  
 0.898
BAV0036
Putative dioxygenase.
  
    0.860
BAV0704
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
    0.821
lpdA
Dihydrolipoamide dehydrogenase.
  
 
 0.777
sdhD
Succinate dehydrogenase hydrophobic membrane anchor subunit.
  
 
 0.724
BAV0654
Putative hydrolase.
  
    0.708
BAV1526
Putative membrane protein.
  
    0.706
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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