Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV0782Two component system sensor kinase. (399 aa)    
Predicted Functional Partners:
BAV0783
Two component system response regulator.
 
  
 0.994
wlbJK
Putative membrane protein.
  
 
 0.851
bvgS
Virulence sensor protein; Start codon not provided.
  
 
 0.696
flgD
Basal-body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein.
   
    0.672
BAV1619
Putative lipoprotein.
  
     0.481
BAV0751
Putative membrane protein.
  
     0.480
BAV0749
Conserved hypothetical protein; Start codon not provided.
  
     0.476
cyoD
Cytochrome O ubiquinol oxidase subunit IV.
       0.465
BAV0750
Probable outer membrane protein.
  
     0.461
cyoA
Ubiquinol oxidase polypeptide II; Start codon not provided.
     
 0.457
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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