STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0783Two component system response regulator. (185 aa)    
Predicted Functional Partners:
BAV0782
Two component system sensor kinase.
 
  
 0.994
cyoD
Cytochrome O ubiquinol oxidase subunit IV.
       0.558
cyoA
Ubiquinol oxidase polypeptide II; Start codon not provided.
       0.547
cyoC
Cytochrome O ubiquinol oxidase subunit III.
       0.546
wlbJK
Putative membrane protein.
  
 
 0.538
cyoB
Ubiquinol oxidase polypeptide I; Belongs to the heme-copper respiratory oxidase family.
     
 0.527
bvgS
Virulence sensor protein; Start codon not provided.
 
 
 0.520
BAV0750
Probable outer membrane protein.
  
     0.467
BAV1662
Two-component sensor kinase.
     
 0.428
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.